refactor: console improvements — auto-discovery, centralized bootstrap, per-command help

- ConsoleApplication.discoverCommands() scans lib/Console/Commands/ automatically;
  adding a new command no longer requires editing bin/console
- Command base class provides bootstrapApp(), bootstrapModuleApp(), requireBinScript()
  and projectRoot() helpers — eliminates fragile 4-level relative require_once paths
- Per-command --help support via optional usage() method on Command
- Docker-compose scheduler updated to use bin/console scheduler:run
- Old bin scripts now emit deprecation hint to stderr when called directly

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

lib/Console/Commands/Module/PermissionsSyncCommand.php

@@ -18,8 +18,8 @@ final class PermissionsSyncCommand extends Command
 
     public function execute(array $args, array $options): int
     {
-        require_once __DIR__ . '/../../../../bin/module-cli-bootstrap.php';
-        require_once __DIR__ . '/../../../../bin/module-permissions-sync.php';
+        $this->requireBinScript('module-cli-bootstrap.php');
+        $this->requireBinScript('module-permissions-sync.php');
 
         return modulePermissionsSyncRun();
     }