deactivateOrphaned() treated ALL is_system=1 permissions as module-owned.
Core seed permissions (users.view, tenants.view, etc.) are also is_system=1,
so they were incorrectly deactivated — breaking admin panel access.
Fix: scan all module manifests on disk (enabled or not) to build the set of
module-owned permission keys. Only deactivate permissions whose key appears
in that set. Core seed permissions are never touched.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- ConsoleApplication.discoverCommands() scans lib/Console/Commands/ automatically;
adding a new command no longer requires editing bin/console
- Command base class provides bootstrapApp(), bootstrapModuleApp(), requireBinScript()
and projectRoot() helpers — eliminates fragile 4-level relative require_once paths
- Per-command --help support via optional usage() method on Command
- Docker-compose scheduler updated to use bin/console scheduler:run
- Old bin scripts now emit deprecation hint to stderr when called directly
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
