refactor(cli)!: hard-cut legacy scripts and standardize console runtime

- remove legacy bin/module-*.php and bin/doctor.php entry scripts

- move module/doctor execution into class-based runners under lib/Console

- add stable JSON output for doctor and module:sync

- introduce bin/dev for init/up/down/logs/console/qa workflow

- update DI wiring, phpstan scan config, tests, and docs to new CLI contract

tests/Console/DoctorCommandTest.php

@@ -0,0 +1,79 @@
+<?php
+
+namespace MintyPHP\Tests\Console;
+
+use MintyPHP\Console\Commands\DoctorCommand;
+use MintyPHP\Console\Runner\Doctor\DoctorRunnerInterface;
+use PHPUnit\Framework\TestCase;
+
+final class DoctorCommandTest extends TestCase
+{
+    public function testDoctorJsonFormatOutputsStableShapeAndExitCode(): void
+    {
+        $runner = new FakeDoctorRunner([
+            'command' => 'doctor',
+            'status' => 'fail',
+            'checks' => [
+                ['status' => 'ok', 'name' => 'A', 'message' => 'B'],
+            ],
+            'ok_count' => 1,
+            'warn_count' => 0,
+            'fail_count' => 1,
+            'exit_code' => 1,
+            'duration_ms' => 12,
+        ]);
+
+        $command = new DoctorCommand($runner);
+
+        ob_start();
+        $exitCode = $command->execute([], ['format' => 'json']);
+        $output = (string) ob_get_clean();
+
+        self::assertSame(1, $exitCode);
+
+        /** @var array<string, mixed> $decoded */
+        $decoded = json_decode($output, true, 512, JSON_THROW_ON_ERROR);
+        self::assertSame('doctor', $decoded['command']);
+        self::assertSame('fail', $decoded['status']);
+        self::assertSame(1, $decoded['exit_code']);
+        self::assertSame(12, $decoded['duration_ms']);
+        self::assertArrayHasKey('checks', $decoded);
+        self::assertIsArray($decoded['checks']);
+    }
+
+    public function testDoctorInvalidFormatReturnsOne(): void
+    {
+        $command = new DoctorCommand(new FakeDoctorRunner([
+            'command' => 'doctor',
+            'status' => 'ok',
+            'checks' => [],
+            'ok_count' => 0,
+            'warn_count' => 0,
+            'fail_count' => 0,
+            'exit_code' => 0,
+            'duration_ms' => 0,
+        ]));
+
+        $exitCode = $command->execute([], ['format' => 'xml']);
+        self::assertSame(1, $exitCode);
+    }
+}
+
+final class FakeDoctorRunner implements DoctorRunnerInterface
+{
+    /** @var array<string, mixed> */
+    private array $result;
+
+    /**
+     * @param array<string, mixed> $result
+     */
+    public function __construct(array $result)
+    {
+        $this->result = $result;
+    }
+
+    public function run(): array
+    {
+        return $this->result;
+    }
+}