refactor(cli)!: hard-cut legacy scripts and standardize console runtime

- remove legacy bin/module-*.php and bin/doctor.php entry scripts

- move module/doctor execution into class-based runners under lib/Console

- add stable JSON output for doctor and module:sync

- introduce bin/dev for init/up/down/logs/console/qa workflow

- update DI wiring, phpstan scan config, tests, and docs to new CLI contract

lib/Console/Commands/Module/RuntimeSyncCommand.php

@@ -2,9 +2,7 @@
 
 namespace MintyPHP\Console\Commands\Module;
 
-use MintyPHP\Console\Command;
-
-final class RuntimeSyncCommand extends Command
+final class RuntimeSyncCommand extends AbstractModuleCommand
 {
     public function name(): string
     {
@@ -16,10 +14,42 @@ final class RuntimeSyncCommand extends Command
         return 'Run full module runtime sync (migrate, permissions, build, assets)';
     }
 
+    public function usage(): string
+    {
+        return <<<'USAGE'
+        Usage: php bin/console module:sync [--format=json]
+
+        Options:
+          --format=json    Output stable JSON for automation
+        USAGE;
+    }
+
     public function execute(array $args, array $options): int
     {
-        $this->requireBinScript('module-runtime-sync.php');
+        $format = strtolower((string) ($options['format'] ?? 'human'));
+        if (!in_array($format, ['human', 'json'], true)) {
+            fwrite(STDERR, "Invalid format '{$format}'. Supported: human, json\n");
+            return 1;
+        }
 
-        return moduleRuntimeSyncRun();
+        $result = $this->moduleRunner()->runtimeSync();
+
+        if ($format === 'json') {
+            echo json_encode($result, JSON_PRETTY_PRINT | JSON_UNESCAPED_SLASHES) . PHP_EOL;
+            return (int) $result['exit_code'];
+        }
+
+        foreach ($result['steps'] as $stepName => $step) {
+            echo sprintf(
+                "module-runtime-sync: step=%s status=%s exit_code=%d vendor_warnings_ignored=%d\n",
+                $stepName,
+                $step['status'],
+                $step['exit_code'],
+                $step['vendor_warnings_ignored']
+            );
+        }
+        echo $result['message'] . PHP_EOL;
+
+        return (int) $result['exit_code'];
     }
 }