refactor(cli)!: hard-cut legacy scripts and standardize console runtime

- remove legacy bin/module-*.php and bin/doctor.php entry scripts

- move module/doctor execution into class-based runners under lib/Console

- add stable JSON output for doctor and module:sync

- introduce bin/dev for init/up/down/logs/console/qa workflow

- update DI wiring, phpstan scan config, tests, and docs to new CLI contract

lib/Console/Commands/Module/DeactivateCommand.php

@@ -2,9 +2,7 @@
 
 namespace MintyPHP\Console\Commands\Module;
 
-use MintyPHP\Console\Command;
-
-final class DeactivateCommand extends Command
+final class DeactivateCommand extends AbstractModuleCommand
 {
     public function name(): string
     {
@@ -37,18 +35,15 @@ final class DeactivateCommand extends Command
             return 1;
         }
 
-        // Rebuild global argv for the underlying script
-        global $argv;
-        $argv = ['module-deactivate.php', $moduleId];
-        if ($options['confirm'] ?? false) {
-            $argv[] = '--confirm';
-        }
-        if ($options['dry-run'] ?? false) {
-            $argv[] = '--dry-run';
-        }
+        $result = $this->moduleRunner()->deactivate(
+            $moduleId,
+            (bool) ($options['confirm'] ?? false),
+            (bool) ($options['dry-run'] ?? false)
+        );
 
-        $this->requireBinScript('module-deactivate.php');
+        $stream = $result['exit_code'] === 0 ? STDOUT : STDERR;
+        fwrite($stream, $result['message'] . PHP_EOL);
 
-        return moduleDeactivateRun();
+        return (int) $result['exit_code'];
     }
 }