fix: patch remaining lib/ references missed in core/ rename

CliAppBootstrap and ModuleCliRuntime still required from the old
lib/ path, which would break all CLI commands. Also fixes stale
lib/ references in docs, test assertion messages, and a PHPDoc
comment.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

tests/Architecture/SecurityCryptoContractTest.php

@@ -5,7 +5,7 @@ namespace MintyPHP\Tests\Architecture;
 use PHPUnit\Framework\TestCase;
 
 /**
- * GR-SEC-005: All encryption/decryption MUST use lib/Support/Crypto.php.
+ * GR-SEC-005: All encryption/decryption MUST use core/Support/Crypto.php.
  * No raw openssl_encrypt/decrypt calls outside that single file.
  */
 class SecurityCryptoContractTest extends TestCase