refactor: rename lib/ to core/ for clearer core-module separation

Rename the top-level lib/ directory to core/ so the project root
immediately communicates which code is core platform and which lives
in modules/. PHP namespaces (MintyPHP\*) are unchanged — only the
Composer PSR-4 path mapping moves from lib/ to core/.

Module-internal lib/ directories (modules/*/lib/) are untouched.

Updated across the full stack:
- composer.json PSR-4 mapping
- bootstrap entry points (web/index.php, bin/*, tests/bootstrap.php)
- tooling configs (phpstan.neon, phpunit.xml, php-cs-fixer)
- 26 architecture contract tests
- enforcement-policy, guard-catalog, quality-gates
- all documentation (CLAUDE.md, README, 25 docs/, .agents/skills/)
- bin/qa-extended.sh search paths
- .claude/settings.local.json permission paths

Workflow: .agents/runs/CORE-LIB-RENAME-001/ (Analyst → Planner →
Executor → Code Review (4 findings fixed) → Security Review →
Acceptance Test → Finalizer)

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

core/Console/Commands/Module/RuntimeSyncCommand.php

@@ -0,0 +1,55 @@
+<?php
+
+namespace MintyPHP\Console\Commands\Module;
+
+final class RuntimeSyncCommand extends AbstractModuleCommand
+{
+    public function name(): string
+    {
+        return 'module:sync';
+    }
+
+    public function description(): string
+    {
+        return 'Run full module runtime sync (migrate, permissions, build, assets)';
+    }
+
+    public function usage(): string
+    {
+        return <<<'USAGE'
+        Usage: php bin/console module:sync [--format=json]
+
+        Options:
+          --format=json    Output stable JSON for automation
+        USAGE;
+    }
+
+    public function execute(array $args, array $options): int
+    {
+        $format = strtolower((string) ($options['format'] ?? 'human'));
+        if (!in_array($format, ['human', 'json'], true)) {
+            fwrite(STDERR, "Invalid format '{$format}'. Supported: human, json\n");
+            return 1;
+        }
+
+        $result = $this->moduleRunner()->runtimeSync();
+
+        if ($format === 'json') {
+            echo json_encode($result, JSON_PRETTY_PRINT | JSON_UNESCAPED_SLASHES) . PHP_EOL;
+            return (int) $result['exit_code'];
+        }
+
+        foreach ($result['steps'] as $stepName => $step) {
+            echo sprintf(
+                "module-runtime-sync: step=%s status=%s exit_code=%d vendor_warnings_ignored=%d\n",
+                $stepName,
+                $step['status'],
+                $step['exit_code'],
+                $step['vendor_warnings_ignored']
+            );
+        }
+        echo $result['message'] . PHP_EOL;
+
+        return (int) $result['exit_code'];
+    }
+}